Azure websites ftp upload fails on some files but not others
This sounds like a time-out issue on the server. You will need to tell your FTP client to keep the connection alive so that it doesn't start a second connection while the first connection is still trying to upload the files.
To set this in FileZilla client, go to Edit, Settings, Connection, FTP, and check "Send FTP keep-alive commands" checkbox.
For more detailed explanation of the problem, visit: http://blogs.msdn.com/b/wats/archive/2013/12/13/setting-up-a-passive-ftp-server-in-windows-azure-vm.aspx Scroll towards the bottom and read the "Points to consider from Azure SLB perspective" section.
I had the same problem with my FTP on Azure and checking the "Send FTP keep-alive commands" checkbox above solved my problem.
Hope this helps!
I was having the same issue with Azure + FileZilla. I solved the problem by connecting to the FTP host name and not the FTPS host name.
I ran into a similar issue, but with a slightly different error message:
Response: 150 Opening BINARY mode data connection.Response: 550 The supplied message is incomplete. The signature was not verified. Error: File transfer failed
I solved the problem by using CuteFTP instead of FileZilla.