Select dataframe row from rowname using case-insensitive (like `grep -i`)
You can do it like this:
query = 'hdgfl1'mask = df.index.to_series().str.contains(query, case=False)df[mask]
Another possibility would be:
mask = df.reset_index()['index'].str.contains(query, case=False)
but this is 2x slower.
In [229]: df.filter(regex=r'(?i)hdgfl1', axis=0)Out[229]: 0 1 21421293_at Hdgfl1 2.140412 1.143337 3.260313
And with select():
import pandas as pdimport numpy as npimport matplotlib.pyplot as pltimport remydict = {"1421293_at Hdgfl1":[2.140412,1.143337,3.260313],"1429877_at Lrriq3":[ 9.019368,0.874524,2.051820],"1421293_at hDGFl1":[2.140412,1.143337,3.260313],}df = pd.DataFrame.from_dict(mydict, orient='index')def create_match_func(a_str): def match_func(x): pattern = r".* {}".format(a_str) match_obj = re.search(pattern, x, flags=re.X|re.I) return match_obj return match_funcprint dfprint '-' * 20target = "hdgfl1"print df.select(create_match_func(target), axis=0)--output:-- 0 1 21421293_at Hdgfl1 2.140412 1.143337 3.2603131429877_at Lrriq3 9.019368 0.874524 2.0518201421293_at hDGFl1 2.140412 1.143337 3.260313-------------------- 0 1 21421293_at Hdgfl1 2.140412 1.143337 3.2603131421293_at hDGFl1 2.140412 1.143337 3.260313
...
df.select(lambda x: x == 'A', axis=1)
select()
takes a function
which operates on the label(s) along axis
and thefunction should return a boolean
.
http://pandas.pydata.org/pandas-docs/stable/indexing.html#the-select-method