How to delete empty folders using windows command prompt?

You can use the ROBOCOPY command. It is very simple and can also be used to delete empty folders inside large hierarchy.

ROBOCOPY folder1 folder1 /S /MOVE

Here both source and destination are folder1, as you only need to delete empty folders, instead of moving other(required) files to different folder. /S option is to skip copying(moving - in the above case) empty folders. It is also faster as the files are moved inside the same drive.

A simpler way is to do xcopy to make a copy of the entire directory structure using /s switch. help for /s says Copies directories and subdirectories except empty ones.

xcopy dirA dirB /S

where dirA is source with Empty folders. DirB will be the copy without empty folders

for /f "usebackq" %%d in (`"dir /ad/b/s | sort /R"`) do rd "%%d"

from: http://blogs.msdn.com/b/oldnewthing/archive/2008/04/17/8399914.aspx

Of course I'd test it first without deleting before I do that command. Also, here's a modded version from the comments that includes folders with spaces:

 for /f "usebackq delims=" %%d in (`"dir /ad/b/s | sort /R"`) do rd "%%d"

P.S. there are more comments in the blog post that might help you out so be sure to read those too before you try this out